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Publications !!!

Journals & Conference Proceedings :

• Vigneshwaran Namasivayam, Robert Günther, Swarms Intelligence in Rational Drug Design, Proceedings of 5th Leipzig Research Festival for Life Sciences, Leipzig. Germany., 2006, 74. ISBN:3-9810760-1-X

• Vigneshwaran Namasivayam, Robert Günther, PSO@Autodock3 : A novel bio-algorithm based fast flexible docking tool for virtual screening, Proceedings "From Computational Biophysics to Systems Biology" (CBSB07), NIC Series, Vol.36, 2007, 239-241. ISBN:978-3-9810843-2-0  <PDF>

• Vigneshwaran Namasivayam, Robert Günther, PSO@Autodock : A fast flexible molecular docking program based on swarm intelligence, Chem Biol & Drug Des 2007 (70), 475-484. <PDF>

        The cover of the december 2007 issue of Chemical Biology & Drug Design (CBDD)
         shows an llustration of our PSO@Autodock docking program.
 

• Vigneshwaran Namasivayam, Robert Günther,  Performance of Molecular Docking Algorithms on Glycogen Synthase Kinase -3 Beta, Proceedings of 6th Leipzig Research Festival for Life Sciences, Leipzig. Germany., 2007, 263. ISBN 3-9810760-2-8 

• Vigneshwaran Namasivayam, Robert Günther, Flexible Pepide-Protein Docking employing PSO@Autodock, Proceedings "From Computational Biophysics to Systems Biology" (CBSB08), NIC Series, Vol.40, 2008, 337-340. ISBN:978-3-9810843-6-8  <PDF>

• Vigneshwaran Namasivayam, Robert Günther,  Screening for subtype selective inhibitors of β-adrenergic receptors employing PSO@Autodock, Proceedings of 7th Leipzig Research Festival for Life Sciences, Leipzig. Germany., 2008, 269.  ISBN 3-9810760-4-4. 

Talks :

• Vigneshwaran Namasivayam, Bio-Algorithms in Molecular Docking, Molecular Docking, Complexity and Optimization, European Conference on Complex Systems, 2007, Dresden. Germany. 

• Vigneshwaran Namasivayam, Particle Swarm Optimization : A novel approach for virtual screening, SFB610 Workshop, 2007, Oppurg. Germany.

Poster Presentations :

• Vigneshwaran Namasivayam, Schild, Robert Günther, Screening for subtype selective inhibitors of β-adrenergic receptors employing PSO@Autodock, 7th Leipzig Research Festival for Life Sciences, 11-12 December 2008, Leipzig. Germany.

• Vigneshwaran Namasivayam, Enrico Schild, Robert Günther, Annette G. Beck-Sickinger, Binding of Peptide to GPCRs - A Molecular Docking Approach with PSO@Autodock, 30th European Peptide Symposium, 31 August - 5 September 2008, Helsinki. Finland.

• Vigneshwaran Namasivayam, Robert Günther, Flexible Pepide-Protein Docking employing PSO@Autodock, From Computational Biophysics to Systems Biology, 19-21 May 2008, Jülich. Germany.

• Vigneshwaran Namasivayam, Robert Günther, Validation of Fast Flexible Molecular Docking Programs , First International Meeting "Conformational transitions in macromolecular interactions", 28 February -1 March 2008, Halle(Saale). Germany.

• Vigneshwaran Namasivayam, Andreas Hilgeroth, Robert Günther, Induced Fit Docking : Performance of Molecular Docking Algorithms on Glycogen Synthase Kinase -3 Beta, 6th Leipzig Research Festival for Life Science 2007, 13-14 December 2007, Leipzig. Germany

• Vigneshwaran Namasivayam, Robert Günther, Docking with PSO@Autodock : A novel fast docking program employing the varCPSO-ls Particle Swarm Algorithm, 43rd Symposium on Theoretical Chemistry, 16-20 September 2007, Saarbrücken. Germany. 

• Vigneshwaran Namasivayam, Robert Günther, Peptide-Protein Docking : A novel molecular docking approach with PSO@Autodock3, SFB Symposium, 29 June - 1 July 2007, Leipzig. Germany. 

• Vigneshwaran Namasivayam, Robert Günther, PSO@Autodock3 : A novel bio-algorithm based fast flexible docking tool for virtual screening, From Computational Biophysics to Systems Biology, 2-4 May 2007, Jülich. Germany.

• Vigneshwaran Namasivayam, Robert Günther, Virtual Screening with PSO@Autodock3 : A novel approach for fast flexible molecular docking, 8th German Peptide Symposium , 14-17 March 2007, Heidelberg. Germany.

• Vigneshwaran Namasivayam, Robert Günther, Novel molecular docking techniques : Swarm Intelligence in Drug Design, 8th German Peptide Symposium, 14-17 March 2007, Heidelberg. Germany.

• Vigneshwaran Namasivayam, Robert Günther, Swarms Intelligence in Rational Drug Design, 5th Leipzig Research Festival for Life Science 2006, 14-15 December 2006, Leipzig. Germany.

• Vigneshwaran Namasivayam, Robert Günther, Swarms@Autodock3 : A novel approach for fast flexible ligand docking, 42nd Symposium on Theoretical Chemistry, 3-6 September 2006, Berlin. Germany.

Dissertation :

Master of Technology - Thesis
Optimization and performance analysis of parallel versions of CLUSTALW and Parallelization of sequential GeneID"  SASTRA University 2004.

Bachelor of Technology - Thesis
Production of Sorbitol (12 Tonnes / day). Developed a tool for designing Evaporator using Java Programming. Bharathidasan University 2000.

Technical Presentations

Presented technical papers during undergraduate at various National Level Technical Symposium for undergraduate students.

Vigneshwaran.N., and Jayakumar.K., Sugar Industry effluent treatment using packed bed reactor at Chemfluence 2000, Anna University, Chennai.

Harikrishnan.P., and Vigneshwaran.N., Phenolic Effluent Treatment at Civilinium 2000, Bharath Institute of Science & Technology, Chennai.

Vigneshwaran.N., and Sanjeevi.S.T., Value added product from Coal Ash at Apogee ’99, Birla Institute of Technnology & Science (BITS), Pilani.

Vigneshwaran.N., and Ramakrishnan.P., Computer Aided Design of Finned Tube Heat Exchanger using C Programming at TechnoQuest ’99 – Zealiche, Erode Senguthar Engineering College, Erode.

Ganapathy.P.R., and Vigneshwaran.N., Biodegradable Polymers at Cresmer ’98, Crescent Engineering College, Chennai.

Last Updated : December 15, 2008.

My Related Links

• My U.G. Project Field
• Process Design
• My P.G. Project   Field
• Parallel Computing
• My Ph.D Project Field
• Virtual Screening

© 2006-2008 Vigneshwaran Namasivayam